Hello, Welcome to icliniq.com. Sorry to hear that your little one is not in good spirits today. A neonate can be upset for a variety of reasons ranging from tummy upset, colic, nose block, ear ache, tiredness, etc. Since you are having a minor infection and she is waking frequently, there may be a possibility of her having either nose block or initiation of some upper respiratory tract infection. Even change in temperature can also affect the babies.
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