HomeAnswersNeurologyneurofibromatosisMy brother's tumor was resected and sent for molecular testing. Can you interpret the results?

How to interpret the findings of molecular testing reports of a resected tumor?

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The following is an actual conversation between an iCliniq user and a doctor that has been reviewed and published as a Premium Q&A.

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Published At November 1, 2022
Reviewed AtFebruary 21, 2023

Patient's Query

Hello doctor,

A tumor was resected and sent for molecular testing. The results came back, and these were the findings:

The following mutations were detected in the tumor:

Mutation VAF or Copy- No.

BRIP1 Y748* 46 %.

NF2 c. 448-1G>A 58 % .

What does this result mean?

Hello,

Welcome to icliniq.com.

As you did not describe the location, imaging, and patient history, it is very difficult for a clinician like me to give you a quality consult.

Nevertheless, the NF2 mutation that you mentioned in your note is the famous mutation that is seen in neurofibromatosis type 2. It is a genetic disorder that causes multi-benign tumors around nerves and nerve sheets in the brain, spinal cord, and peripheral nerves. For example, it can cause acoustic neuroma around the vestibular nerve and cause hearing problems or even palsy of one-half of the face. You also mentioned the BRIP mutation that is related to ovarian and breast cancer susceptibility. I cannot relate these two separate mutations to one condition.

You should request a consult from a geneticist.

Patient's Query

Hello doctor,

Thank you. Around 12 years back, my brother had surgery and was told it was a rhabdoid meningioma (no scientific test, only academic). This year, they said it had come back and was rhabdoid (just by assuming it was the same). Six months back, they resected the tumor, and it was sent for molecule testing, which showed two mutations. Although we do not understand the mutations as they do not seem to be cancerous. Did my brother even have cancer? Do the mutations referred to in the molecular report mean cancer, or was it, in fact, benign all along? I am attaching a copy of the report following surgery this year and the molecular testing report we just received of the tumor referred to in the AP report. Please let us know if the tumor was a malignant tumor or not.

Hello,

Welcome back to icliniq.com.

Now, I have a better image of the situation. I saw your attached documents (attachments removed to protect the privacy of the patient). The good news is that your brother's brain tumor is yet benign (non-cancerous and not malignant) because it is a grade 2 meningioma. Nevertheless, there is another side that is not good; the grade 2 atypical meningioma with NF2 and BRIP1 mutations means that the tumor has a high ability of recurrence, and it means that he may need multiple surgeries and the chance of changing to grade 3 (transformation to malignancy) would be notable in the future.

Patient's Query

Hello doctor,

Thank you very much for your reply. The report classifying the meningioma grade 2 was prepared by the hospital, the same hospital that previously said my brother has a grade 3 rhabdoid meningioma. Are you sure it is grade 2? Not simply benign? Usually, with an NF2 mutation, does that only produce benign tumors? Is the two mutation classifications in the molecular report enough to support the tumor being a grade 2 or cancer? I am trying to understand if my brother was misdiagnosed.

Hello,

Welcome back to icliniq.com.

Please note that the grading of meningioma is mainly based on its behavior under a microscope. The pathology report (under a microscope) defined the type grade 2 (non-cancerous). Fortunately, the molecular testing of malignant (grade 3) type meningioma (TERT or CDKN) was not seen in the samples. The NF2 mutation is not a definite grade 3 tumor, but as I said previously, it tells us that your brother's tumor has the ability of multiple recurrences, and in each recurrence, it has the ability to change its manner and transform into a grade 3 (malignant). Moreover, the existence of NF2 mutation tells us the tumor is not grade 1. The BRIP mutation is not related to grade 3 as well. In summary, regarding the NF2 and the pathology report of cells' features under the microscope, the grade of your brother's tumor is grade 2 (non-malignant).

All the above would be true if the pathologist's diagnosis of the tumor were true. If you are suspicious about the pathology report, request a second opinion from another pathologist or pathology center. In your brother's case, if the pathology says possibly that the grade is 3, with the same molecular report, it would be a grade 3. I mean that the pathology report is the cornerstone of grading the tumor. I hope that my explanation has clarified the whole grading process for you.

Patient's Query

Hello doctor,

We were hoping the tumor was benign. Are not all tumors associated with NF2 benign? Are the pathology descriptions consistent with grade 1 or grade 2, in your opinion?

Hello,

Welcome back to icliniq.com.

I hope so. The answer to your first question is: according to WHO (world health organization) classification, NF2-positive tumors may be grade 2 or grade 3 (the pathology report is crucial to determine which grade it is). In your brother's case, the report says it is a grade 2 (atypical meningioma). The answer to 2nd question is; I am a neurologist, not a pathologist. I just rely on the final diagnosis in the pathology report. It is the reason that I recommended you request a second pathologist's opinion if you do not trust that hospital report. In such cases, the second pathologist gives the opinion usually by seeing the histological samples by themselves, not just by reading the report.

Same symptoms don't mean you have the same problem. Consult a doctor now!

Dr. Seyedaidin Sajedi
Dr. Seyedaidin Sajedi

Neurology

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